STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK56959.1TonB-dependent siderophore receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport. (77 aa)    
Predicted Functional Partners:
AGK58233.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.661
AGK60025.1
Iron permease FTR1; COG0672 High-affinity Fe2+/Pb2+ permease.
   
  
 0.580
AGK56960.1
DNA methylase N-4/N-6 domain-containing protein.
       0.507
AGK58415.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
 0.481
AGK58232.1
BNR repeat-containing glycosyl hydrolase.
  
     0.408
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.