STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK57057.1COG2831 Hemolysin activation/secretion protein. (566 aa)    
Predicted Functional Partners:
AGK57058.1
Filamentous hemagglutinin outer membrane protein; COG3210 Large exoproteins involved in heme utilization or adhesion.
 
  
 0.952
AGK57056.1
Hypothetical protein; COG2771 DNA-binding HTH domain-containing proteins.
  
    0.550
AGK57503.1
Outer membrane autotransporter barrel domain-containing protein; COG3468 Type V secretory pathway, adhesin AidA.
  
 
 0.547
AGK56343.1
Adenylate cyclase; COG4252 Predicted transmembrane sensor domain.
 
     0.460
AGK57612.1
GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain.
  
  
 0.434
AGK56381.1
COG3188 P pilus assembly protein, porin PapC.
   
  
 0.422
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.