STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK57072.1COG1309 Transcriptional regulator. (202 aa)    
Predicted Functional Partners:
AGK57068.1
Putative macrolide export ATP-binding protein/permease MacB; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
   0.927
AGK57069.1
Putative permease; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
     0.925
AGK57070.1
HlyD family protein; COG0845 Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.924
AGK57071.1
Transcriptional regulator.
 
    
0.808
AGK57073.1
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response).
 
   
 0.537
AGK57074.1
Hypothetical protein.
     
 0.464
AGK57612.1
GAF sensor hybrid histidine kinase; COG2770 FOG: HAMP domain.
    
 
 0.464
AGK57075.1
Hypothetical protein.
       0.458
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.