STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGK58082.1Hypothetical protein; COG3926 Putative secretion activating protein. (437 aa)    
Predicted Functional Partners:
AGK57250.1
Hypothetical protein.
 
     0.746
AGK59193.1
Hypothetical protein.
  
     0.739
AGK57556.1
Hypothetical protein.
 
     0.725
AGK59445.1
COG1716 FOG: FHA domain.
  
     0.725
AGK58489.1
Hypothetical protein.
  
     0.703
AGK56240.1
Glycosyl transferase family 51; COG5009 Membrane carboxypeptidase/penicillin-binding protein.
  
     0.691
AGK57681.1
Apolipoprotein A1/A4/E.
 
     0.691
AGK57690.1
Hypothetical protein.
  
     0.684
AGK57689.1
Hypothetical protein.
  
     0.682
AGK56592.1
OstA family protein; COG1934 Uncharacterized protein conserved in bacteria.
  
     0.670
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.