STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGK58084.1Phage cell wall peptidase, NlpC/P60 family protein; COG0791 Cell wall-associated hydrolases (invasion-associated proteins). (153 aa)    
Predicted Functional Partners:
AGK58087.1
Gene transfer agent (GTA); COG5281 Phage-related minor tail protein.
 
 
 0.970
AGK58086.1
Hypothetical protein.
 
     0.961
AGK58089.1
Hypothetical protein.
 
    0.957
AGK58085.1
Hypothetical protein.
 
     0.950
AGK58083.1
Gene transfer agent (GTA) like protein.
 
   
 0.915
AGK59433.1
Hypothetical protein.
 
  
 0.842
AGK58092.1
TP901-1 family phage major tail protein; COG5437 Predicted secreted protein.
 
     0.838
AGK58100.1
Phage portal protein, HK97; COG4695 Phage-related protein.
 
    0.836
AGK58093.1
Hypothetical protein.
 
     0.828
AGK58098.1
Phage prohead protease, HK97 family protein; COG3740 Phage head maturation protease.
 
     0.809
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.