STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK58737.1Hypothetical protein; COG3070 Regulator of competence-specific genes. (136 aa)    
Predicted Functional Partners:
AGK58738.1
Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
       0.751
AGK56953.1
Hypothetical protein.
    
   0.651
AGK58741.1
FeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.569
AGK58742.1
FeS assembly ATPase SufC; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
       0.550
AGK58740.1
SufS subfamily cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.549
AGK58739.1
FeS assembly SUF system protein; COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
       0.546
AGK58743.1
Cysteine desulfurase activator complex subunit SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.459
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.