STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGK58821.1COG0531 Amino acid transporters. (461 aa)    
Predicted Functional Partners:
AGK58820.1
Hypothetical protein.
       0.781
AGK58818.1
Hypothetical protein.
       0.768
AGK58819.1
Hypothetical protein.
       0.768
AGK56850.1
COG0531 Amino acid transporters.
  
     0.763
AGK56733.1
COG0531 Amino acid transporters.
  
     0.759
AGK56278.1
COG0531 Amino acid transporters.
  
     0.753
AGK58660.1
COG0531 Amino acid transporters.
  
     0.752
AGK58822.1
Hypothetical protein.
       0.667
AGK58823.1
Hypothetical protein.
       0.667
AGK56677.1
COG3313 Predicted Fe-S protein.
  
     0.484
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.