STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGK58999.1Putative cytoplasmic protein; COG3820 Uncharacterized protein conserved in bacteria. (261 aa)    
Predicted Functional Partners:
lysK
COG1384 Lysyl-tRNA synthetase (class I); Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.774
AGK56456.1
COG3814 Uncharacterized protein conserved in bacteria.
  
   
 0.769
AGK59603.1
Import inner membrane translocase subunit Tim44; COG4395 Uncharacterized protein conserved in bacteria.
  
     0.733
holA
COG1466 DNA polymerase III, delta subunit.
  
     0.719
AGK59032.1
COG3750 Uncharacterized protein conserved in bacteria; Belongs to the UPF0335 family.
  
   
 0.715
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.696
yidC
YidC/Oxa1 family membrane protein insertase; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
     0.666
AGK58576.1
Double-strand break repair helicase AddA; COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); Belongs to the helicase family. UvrD subfamily.
  
     0.644
AGK59978.1
COG1396 Predicted transcriptional regulators.
  
     0.635
AGK59995.1
COG3807 Uncharacterized protein conserved in bacteria.
  
     0.634
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.