STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGK59762.1Conjugal transfer protein TrbD; COG5268 Type IV secretory pathway, TrbD component. (89 aa)    
Predicted Functional Partners:
AGK59763.1
Conjugal transfer protein TrbC; COG3838 Type IV secretory pathway, VirB2 components (pilins).
 
   
 0.951
AGK59757.1
Conjugal transfer protein TrbF; COG3701 Type IV secretory pathway, TrbF components.
 
   
 0.950
AGK59761.1
Conjugal transfer ATPase TrbE; COG3451 Type IV secretory pathway, VirB4 components.
 
   
 0.950
AGK59756.1
Conjugal transfer protein TrbG; COG3504 Type IV secretory pathway, VirB9 components.
 
   
 0.948
AGK59758.1
Conjugal transfer protein TrbL; COG3846 Type IV secretory pathway, TrbL components.
 
   
 0.948
AGK59760.1
COG5314 Conjugal transfer/entry exclusion protein.
 
   
 0.948
AGK59755.1
Conjugal transfer protein TrbI; COG2948 Type IV secretory pathway, VirB10 components.
 
   
 0.944
AGK59754.1
Hypothetical protein; COG5639 Uncharacterized conserved small protein.
 
     0.932
AGK59764.1
Conjugal transfer protein TrbB; COG4962 Flp pilus assembly protein, ATPase CpaF.
 
   
 0.914
AGK59765.1
Hypothetical protein.
 
     0.882
Your Current Organism:
Hyphomicrobium denitrificans 1NES1
NCBI taxonomy Id: 670307
Other names: H. denitrificans 1NES1, Hyphomicrobium denitrificans str. 1NES1, Hyphomicrobium denitrificans strain 1NES1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.