Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGK56278.1 | AGK57321.1 | HYPDE_22958 | HYPDE_28208 | COG0531 Amino acid transporters. | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | 0.756 |
AGK56278.1 | AGK59829.1 | HYPDE_22958 | HYPDE_40803 | COG0531 Amino acid transporters. | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | 0.491 |
AGK56682.1 | AGK59829.1 | HYPDE_24988 | HYPDE_40803 | Hypothetical protein. | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | 0.617 |
AGK57321.1 | AGK56278.1 | HYPDE_28208 | HYPDE_22958 | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | COG0531 Amino acid transporters. | 0.756 |
AGK57321.1 | AGK58660.1 | HYPDE_28208 | HYPDE_34943 | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | COG0531 Amino acid transporters. | 0.757 |
AGK57321.1 | AGK59829.1 | HYPDE_28208 | HYPDE_40803 | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | 0.490 |
AGK58243.1 | AGK59829.1 | HYPDE_32853 | HYPDE_40803 | Hypothetical protein. | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | 0.614 |
AGK58345.1 | AGK59829.1 | HYPDE_33363 | HYPDE_40803 | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | 0.618 |
AGK58660.1 | AGK57321.1 | HYPDE_34943 | HYPDE_28208 | COG0531 Amino acid transporters. | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | 0.757 |
AGK58660.1 | AGK59829.1 | HYPDE_34943 | HYPDE_40803 | COG0531 Amino acid transporters. | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | 0.495 |
AGK59829.1 | AGK56278.1 | HYPDE_40803 | HYPDE_22958 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | COG0531 Amino acid transporters. | 0.491 |
AGK59829.1 | AGK56682.1 | HYPDE_40803 | HYPDE_24988 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | Hypothetical protein. | 0.617 |
AGK59829.1 | AGK57321.1 | HYPDE_40803 | HYPDE_28208 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | LuxR family transcriptional regulator; COG2771 DNA-binding HTH domain-containing proteins. | 0.490 |
AGK59829.1 | AGK58243.1 | HYPDE_40803 | HYPDE_32853 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | Hypothetical protein. | 0.614 |
AGK59829.1 | AGK58345.1 | HYPDE_40803 | HYPDE_33363 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | NUDIX hydrolase; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes. | 0.618 |
AGK59829.1 | AGK58660.1 | HYPDE_40803 | HYPDE_34943 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | COG0531 Amino acid transporters. | 0.495 |
AGK59829.1 | AGK59830.1 | HYPDE_40803 | HYPDE_40808 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | Glyoxalase/bleomycin resistance protein/dioxygenase; COG0346 Lactoylglutathione lyase and related lyases. | 0.773 |
AGK59829.1 | AGK59831.1 | HYPDE_40803 | HYPDE_40813 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | dITP/XTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | 0.773 |
AGK59829.1 | hrcA | HYPDE_40803 | HYPDE_40793 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | Heat-inducible transcription repressor; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons. | 0.484 |
AGK59829.1 | rph | HYPDE_40803 | HYPDE_40798 | Hypothetical protein; COG0078 Ornithine carbamoyltransferase. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.697 |
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