STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascc3DEAD/DEAH box helicase. (2122 aa)    
Predicted Functional Partners:
prpf8
Pre-mRNA processing factor 8.
   
 0.980
ascc2
Ubiquitin system component Cue domain containing protein.
    
 0.970
PPL_11292
J domain-containing protein.
     
 0.949
snrpF
LSM domain-containing protein.
   
 0.948
PPL_03215
LSM domain-containing protein.
   
 0.946
snrpD3
LSM domain-containing protein.
   
 0.946
txnl4a
Thioredoxin-like U5 small nuclear ribonucleoprotein.
    
 0.945
snrpG
Small nuclear ribonucleoprotein G.
   
  0.940
PPL_08867
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.938
prpf6
TPR repeat-containing protein.
   
 0.933
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.