vti1B protein (Heterostelium album) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vti1B

Putative v-SNARE family protein. (140 aa)

Predicted Functional Partners:

PPL_12312

0.987

sybB

0.985

snpA

0.966

PPL_07367

0.965

syn8B

0.961

PPL_05790

0.920

vps45

0.917

syn5

0.913

PPL_05709

0.912

vps18

0.904

Your Current Organism:

Heterostelium album

NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PPL_05709	PPL_05790	D3BAX8	D3BB58	Uncharacterized protein; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein.	0.439
PPL_05709	PPL_07367	D3BAX8	D3BFR6	Uncharacterized protein; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein.	0.439
PPL_05709	PPL_12312	D3BAX8	D3BMA2	Uncharacterized protein; Belongs to the synaptobrevin family.	Synaptobrevin domain-containing protein; Belongs to the synaptobrevin family.	0.997
PPL_05709	snpA	D3BAX8	D3BNG5	Uncharacterized protein; Belongs to the synaptobrevin family.	Soluble NSF attachment protein alpha isoform.	0.993
PPL_05709	sybB	D3BAX8	D3B4M2	Uncharacterized protein; Belongs to the synaptobrevin family.	Synaptobrevin domain-containing protein.	0.594
PPL_05709	syn5	D3BAX8	D3BCB9	Uncharacterized protein; Belongs to the synaptobrevin family.	t-SNARE family protein.	0.999
PPL_05709	syn8B	D3BAX8	D3BEX3	Uncharacterized protein; Belongs to the synaptobrevin family.	Putative syntaxin 8.	0.840
PPL_05709	vti1B	D3BAX8	D3AWC4	Uncharacterized protein; Belongs to the synaptobrevin family.	Putative v-SNARE family protein.	0.912
PPL_05790	PPL_05709	D3BB58	D3BAX8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.439
PPL_05790	PPL_12312	D3BB58	D3BMA2	t-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin domain-containing protein; Belongs to the synaptobrevin family.	0.927
PPL_05790	snpA	D3BB58	D3BNG5	t-SNARE coiled-coil homology domain-containing protein.	Soluble NSF attachment protein alpha isoform.	0.951
PPL_05790	sybB	D3BB58	D3B4M2	t-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin domain-containing protein.	0.870
PPL_05790	syn5	D3BB58	D3BCB9	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE family protein.	0.508
PPL_05790	syn8B	D3BB58	D3BEX3	t-SNARE coiled-coil homology domain-containing protein.	Putative syntaxin 8.	0.847
PPL_05790	vps45	D3BB58	D3BQC3	t-SNARE coiled-coil homology domain-containing protein.	Sec1-like family protein; Belongs to the STXBP/unc-18/SEC1 family.	0.913
PPL_05790	vti1B	D3BB58	D3AWC4	t-SNARE coiled-coil homology domain-containing protein.	Putative v-SNARE family protein.	0.920
PPL_07367	PPL_05709	D3BFR6	D3BAX8	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.439
PPL_07367	PPL_12312	D3BFR6	D3BMA2	t-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin domain-containing protein; Belongs to the synaptobrevin family.	0.927
PPL_07367	snpA	D3BFR6	D3BNG5	t-SNARE coiled-coil homology domain-containing protein.	Soluble NSF attachment protein alpha isoform.	0.951
PPL_07367	sybB	D3BFR6	D3B4M2	t-SNARE coiled-coil homology domain-containing protein.	Synaptobrevin domain-containing protein.	0.961