STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcD1ABC transporter D family protein. (690 aa)    
Predicted Functional Partners:
PPL_00583
LMBR1-like conserved region-containing protein.
    
 0.999
abcD2
ABC transporter D family protein.
  
  
 
0.929
pex19
Peroxin 19.
    
 0.864
pex3
Peroxisomal biogenesis factor 3.
   
 0.795
pex14
Transmembrane protein.
   
 0.767
pex16
Peroxisomal membrane protein PEX16.
     
 0.763
pex11
Transmembrane protein.
   
 
 0.762
pex13
SH3 domain-containing protein.
   
 
 0.751
PPL_04445
P11915 Nonspecific lipid-transfer protein.
   
 
 0.742
pex12
Peroxisome assembly protein 12; Required for protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
   
 
 0.735
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.