STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_01100Uncharacterized protein. (1329 aa)    
Predicted Functional Partners:
atg18
Autophagy protein 18.
    
 0.862
PPL_12469
Protein kinase domain-containing protein.
   
 0.813
atg9
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.754
atg1
Autophagy protein 1; Belongs to the protein kinase superfamily.
   
 0.680
PPL_03275
Protein kinase domain containing protein.
   
 0.680
PPL_05166
Protein kinase domain-containing protein.
   
 0.680
wdr45l
WD repeat domain phosphoinositide-interacting protein 3.
    
 
 0.605
PPL_02148
ATG13 domain-containing protein.
    
 
 0.519
PPL_04279
ZZ-type zinc finger-containing protein.
      
 0.513
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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