STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_01169Pseudouridine synthase family protein. (530 aa)    
Predicted Functional Partners:
PPL_01088
Uncharacterized protein.
  
 
 0.797
pus7
tRNA pseudouridine synthase D.
    
 
 0.765
mrpl21
Ribosomal protein L21.
  
   0.753
rpl12
S60 ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.746
rpl23
S60 ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.739
rpl26
S60 ribosomal protein L26.
   
   0.728
ndufab1
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.725
mrpl3
Ribosomal protein L3.
   
 
 0.711
PPL_09613
G domain-containing protein.
   
 
 0.708
PPL_03137
50S ribosomal protein L13.
  
   0.707
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.