STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcB5ABC transporter B family protein. (655 aa)    
Predicted Functional Partners:
PPL_10228
ABC transporter B family protein.
 
  
 0.944
abcB7
ABC transporter B family protein.
  
 
0.723
abcB4
ABC transporter B family protein.
  
 
0.714
tagA
ABC transporter B family protein.
  
 
0.711
abcB1
ABC transporter B family protein.
  
 
0.708
tagD
ABC transporter B family protein.
    
0.683
coxA
Cytochrome c oxidase assembly protein.
      
 0.679
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
 
 0.637
PPL_00995
Cysteine desulfurase.
    
 
 0.614
fxn
Frataxin.
      
 0.598
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.