STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vti1AV-SNARE family protein. (612 aa)    
Predicted Functional Partners:
PPL_12312
Synaptobrevin domain-containing protein; Belongs to the synaptobrevin family.
    
 0.993
sybB
Synaptobrevin domain-containing protein.
   
 0.989
syn8B
Putative syntaxin 8.
   
 0.987
PPL_07367
t-SNARE coiled-coil homology domain-containing protein.
   
 0.987
syn8A
Syntaxin 8.
   
 0.984
snpA
Soluble NSF attachment protein alpha isoform.
    
 0.966
PPL_05790
t-SNARE coiled-coil homology domain-containing protein.
   
 0.920
PPL_06743
t-SNARE coiled-coil homology domain-containing protein.
   
 0.915
syn7A
Syntaxin 7; Belongs to the syntaxin family.
   
 0.915
syn5
t-SNARE family protein.
    
 
 0.913
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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