STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf4BProtein kinase domain-containing protein. (922 aa)    
Predicted Functional Partners:
prpf6
TPR repeat-containing protein.
    
 
 0.894
PPL_01739
Nop domain-containing protein.
    
 
 0.887
eftud2
U5 small nuclear ribonucleoprotein subunit.
    
 
 0.798
prpf8
Pre-mRNA processing factor 8.
    
 
 0.796
PPL_10361
Uncharacterized protein.
    
 
 0.752
PPL_10084
SART-1 family protein.
   
 
 0.745
sf3b1
HEAT repeat-containing protein.
   
 
 0.738
helB2
Putative RNA helicase.
 
 
 0.738
ascc3l
DEAD/DEAH box helicase.
    
 
 0.737
usp39
SAP DNA-binding domain-containing protein.
    
   0.731
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.