STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps60SNF7 family protein. (224 aa)    
Predicted Functional Partners:
vta1
Uncharacterized protein.
   
 0.999
vps32
SNF7 family protein.
   
 0.996
vps46
SNF7 family protein.
   
 0.987
vps4
AAA ATPase domain-containing protein; Belongs to the AAA ATPase family.
   
 0.978
vps2B
SNF7 family protein.
   
 0.965
vps24
SNF7 family protein.
   
 0.960
PPL_11300
IST1-like protein.
    
 
 0.959
vps2A
SNF7 family protein.
   
 0.948
vps20
SNF7 family protein.
   
 0.894
PPL_09369
SNF7 family protein.
    
 0.865
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.