STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yod1C2H2-type zinc finger-containing protein. (321 aa)    
Predicted Functional Partners:
cdcD
Cell division cycle protein 48; Belongs to the AAA ATPase family.
   
 0.999
PPL_03373
UBX domain-containing protein.
   
 
 0.989
PPL_09428
Uncharacterized protein.
    
 
 0.989
ufd1
Ubiquitin fusion degradation protein UFD1 family protein.
   
 
 0.989
npl4
Nuclear protein localization 4.
    
 
 0.986
PPL_05737
Ubiquitin-like domain-containing protein.
   
 
 0.953
PPL_04142
U-box domain-containing protein.
    
 
 0.901
nosA
U box domain-containing protein.
    
 
 0.901
PPL_05359
AAA ATPase domain-containing protein.
   
 0.870
PPL_09581
AAA family ATPase.
   
 0.870
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.