STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_06986Uncharacterized protein. (739 aa)    
Predicted Functional Partners:
eftud2
U5 small nuclear ribonucleoprotein subunit.
   
 0.842
cdc5l
Myb domain-containing protein.
    
 0.797
atp5b
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 
 0.782
prpf6
TPR repeat-containing protein.
    
 0.776
PPL_10361
Uncharacterized protein.
    
 0.776
atp5C1
ATP synthase subunit gamma.
   
 
 0.773
PPL_03379
CID domain-containing protein.
    
 0.751
PPL_07723
Uncharacterized protein.
   
 0.744
PPL_11946
Helicase ATP-binding domain-containing protein.
  
 
 0.722
PPL_05732
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.709
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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