STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_06752ANK_REP_REGION domain-containing protein. (695 aa)    
Predicted Functional Partners:
PPL_07113
Putative transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
    
 0.561
rbx1
Putative RING box protein.
    
 0.507
commd2
COMM domain-containing protein 2.
    
  0.437
PPL_02606
Uncharacterized protein.
    
 0.434
PPL_11151
C3H1-type domain-containing protein.
    
 0.430
PPL_00131
Ubiquitin-like domain-containing protein.
    
  0.428
PPL_00133
Ubiquitin-like domain-containing protein.
    
  0.428
nedd8
Neddylin.
    
  0.428
PPL_01675
acidPPc domain-containing protein.
    
  0.418
commd10
COMM domain-containing protein 10.
    
  0.417
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.