STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_07378Uncharacterized protein. (295 aa)    
Predicted Functional Partners:
accA
Acetyl-CoA carboxylase.
    
  0.727
hlcs3
Biotin--[acetyl-CoA-carboxylase] ligase 3.
     
 0.687
mccA
Methylcrotonyl-CoA carboxylase.
    
  0.618
pccA
Propionyl-CoA carboxylase.
    
  0.618
PPL_11491
TH1 family protein.
    
  0.618
PPL_01008
3-methyl-2-oxobutanoate hydroxymethyltransferase.
     
 0.617
PPL_02900
PKS_AT domain-containing protein.
     
 0.532
PPL_03604
Uncharacterized protein.
      
 0.510
tbcD
Tubulin folding cofactor D.
     
 0.508
gchA
GTP cyclohydrolase I.
     
 0.456
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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