STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_08609Uncharacterized protein. (575 aa)    
Predicted Functional Partners:
PPL_08525
Phox domain-containing protein.
    
 0.697
PPL_02938
Uncharacterized protein.
    
 0.583
rab5B
Rab GTPase.
    
 0.479
rab5A
Rab GTPase.
    
 0.479
PPL_07307
Uncharacterized protein.
    
 0.479
PPL_10503
Rab GTPase.
    
 0.479
rabJ
Rab GTPase.
    
 0.479
PPL_05737
Ubiquitin-like domain-containing protein.
    
  0.439
PPL_01505
Rab proteins geranylgeranyltransferase component; Substrate-binding subunit of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins; Belongs to the Rab GDI family.
     
 0.414
PPL_00390
Uncharacterized protein.
    
 
 0.406
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.