STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_10210Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (492 aa)    
Predicted Functional Partners:
PPL_07308
Isocitrate lyase.
  
 
 0.949
agxt
Serine-pyruvate transaminase.
  
 0.916
argC
Acetylglutamate kinase.
     
 0.854
PPL_08889
Uncharacterized protein.
   
 
 0.851
pyd3
Beta-alanine synthase.
  
 
 0.842
bcaA
Branched-chain-amino-acid aminotransferase; Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.838
gcvP
Glycine cleavage system P protein; The glycine cleavage system catalyzes the degradation of glycine.
  
 
 0.822
PPL_04208
Semialdhyde_dh domain-containing protein.
    
 0.801
PPL_09321
Formimidoylglutamase; Belongs to the arginase family.
  
 
 0.796
mmsdh
Methylmalonate-semialdehyde dehydrogenase.
 
 
 
 0.794
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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