STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PPL_11048Usp domain-containing protein. (184 aa)    
Predicted Functional Partners:
PPL_03607
DEAD/DEAH box helicase.
    
 0.816
PPL_00382
Uncharacterized protein.
    
 0.762
paf1
RNA polymerase II-associated factor 1.
   
 0.745
leo1
RNA polymerase II complex component.
    
 0.741
ctr9
RNA polymerase II complex component.
    
 0.738
DG1091
Tetratricopeptide-like helical domain-containing protein.
    
 0.700
PPL_09658
TPR_REGION domain-containing protein.
    
 0.700
cytC
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.688
PPL_04603
Ubiquitin-conjugating BIR-domain enzyme apollon.
    
 0.682
PPL_02115
Uncharacterized protein.
    
  0.648
Your Current Organism:
Heterostelium album
NCBI taxonomy Id: 670386
Other names: H. album PN500, Heterostelium album PN500, Heterostelium pallidum PN500, Polysphondylium pallidum PN500
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.