STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF08843.1HEAT repeat-containing protein. (397 aa)    
Predicted Functional Partners:
SDF08818.1
Hypothetical protein.
 
     0.932
SDF08886.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
     0.911
SDF08999.1
Hypothetical protein.
 
     0.869
SDF08920.1
Response regulator receiver domain-containing protein.
 
     0.744
SDE62089.1
Hypothetical protein.
 
     0.734
SDF80948.1
Hypothetical protein.
 
     0.706
SDE62070.1
Hypothetical protein.
 
     0.702
efp
Translation elongation factor P (EF-P); Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.627
SDE92765.1
Uncharacterized membrane protein YckC, RDD family.
  
     0.605
SDE63480.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.594
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.