STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF15585.1Lia operon protein LiaF. (216 aa)    
Predicted Functional Partners:
SDF15564.1
Two-component system, NarL family, sensor histidine kinase LiaS.
 
  
 0.964
SDF83111.1
Lia operon protein LiaF.
  
  
 
0.900
SDF15531.1
Two component transcriptional regulator, LuxR family.
 
    0.866
SDF15649.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
 
    0.832
SDF15620.1
Phage shock protein A (PspA) family protein.
  
  
 0.827
SDF15683.1
Phage shock protein A (PspA) family protein.
  
  
 0.805
SDE60478.1
Two-component system, NarL family, sensor histidine kinase NreB.
  
  
 0.720
SDF87066.1
Two-component system, NarL family, sensor histidine kinase DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase.
  
  
 0.720
SDF32636.1
Uncharacterized membrane protein YheB, UPF0754 family.
   
    0.668
SDG56638.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
  
 0.658
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.