STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF12775.1ABC-2 type transport system ATP-binding protein. (306 aa)    
Predicted Functional Partners:
SDF12738.1
DNA-binding transcriptional regulator YhcF, GntR family.
    0.976
SDF12800.1
Hypothetical protein.
       0.803
SDF52277.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
    0.594
SDE90843.1
DNA-binding transcriptional regulator YhcF, GntR family.
 
    0.567
SDF12713.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.535
SDF20503.1
ABC-2 type transport system permease protein.
  
 
  0.471
SDF76575.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
  0.437
SDF26770.1
ABC-2 type transport system permease protein.
  
 
  0.436
SDE90929.1
ABC-2 type transport system permease protein.
   
  0.429
SDE90991.1
ABC-2 type transport system permease protein.
   
  0.429
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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