STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF40280.1Spore germination protein KA. (535 aa)    
Predicted Functional Partners:
SDF40307.1
Spore germination protein KC.
    0.944
SDF40370.1
Spore germination protein KB.
 
    0.910
SDE65423.1
Stage V sporulation protein AD.
  
  
 0.782
SDE81480.1
Stage V sporulation protein AC.
  
    0.781
SDE65397.1
Stage V sporulation protein AC.
  
    0.780
gpr
GPR endopeptidase Aspartic peptidase. MEROPS family A25; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.776
SDF70587.1
Spore germination protein KC.
    0.775
SDE81440.1
Stage V sporulation protein AE.
  
    0.774
SDG06859.1
SpoIVB peptidase. Serine peptidase. MEROPS family S55.
  
     0.774
SDG16901.1
Transcriptional regulator, AbrB family.
  
     0.774
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.