STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF64015.1Fe-S cluster assembly iron-binding protein IscA. (100 aa)    
Predicted Functional Partners:
SDF64056.1
Protein of unknown function.
       0.823
SDF35898.1
Nitrogen fixation protein NifU.
  
  
 0.818
SDE57647.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.591
SDF13808.1
Fe-S cluster biogenesis protein NfuA, 4Fe-4S-binding domain.
  
 
 0.591
SDE77942.1
Cysteine desulfurase.
  
  
 0.519
SDF88434.1
Cysteine desulfurase.
  
  
 0.519
SDF94669.1
Cysteine desulfurase.
  
  
 0.519
SDE96066.1
Glutaredoxin.
  
  
 0.507
SDE57568.1
Iron-regulated ABC transporter ATPase subunit SufC.
  
 
 0.506
SDF36001.1
Iron-regulated ABC transporter ATPase subunit SufC.
  
 
 0.506
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.