STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF74168.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (231 aa)    
Predicted Functional Partners:
SDF74199.1
Signal transduction histidine kinase.
  0.972
SDE63807.1
Signal transduction histidine kinase.
 
  0.897
SDE99319.1
Signal transduction histidine kinase.
 0.895
SDE63754.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.881
SDF46254.1
Signal transduction histidine kinase.
 
  0.863
SDE97822.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.856
SDF20075.1
Signal transduction histidine kinase.
 
  0.849
SDE66650.1
Signal transduction histidine kinase.
 
  0.847
SDG21482.1
PAS/PAC sensor signal transduction histidine kinase.
  0.845
SDE87956.1
Signal transduction histidine kinase.
 
  0.843
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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