STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF83150.13D (Asp-Asp-Asp) domain-containing protein. (233 aa)    
Predicted Functional Partners:
SDE82247.1
LysM domain-containing protein.
   
  
 0.715
SDE96937.1
Nucleoid-associated protein YgaU, contains BON and LysM domains.
   
  
 0.715
SDG17338.1
Ca-activated chloride channel family protein.
  
     0.616
SDG17097.1
Spore cortex biosynthesis protein YabQ.
  
     0.591
SDG07665.1
Conserved membrane protein YqhR.
  
     0.576
SDG21817.1
Protein of unknown function.
  
     0.491
SDG16821.1
Protein of unknown function.
  
     0.484
SDG14825.1
Spore germination protein D.
  
     0.467
SDE78536.1
Sporulation protein YqfC.
  
     0.459
SDG17215.1
Stage II sporulation protein E.
  
    0.442
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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