STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF96956.1Ornithine cyclodeaminase/mu-crystallin family protein. (347 aa)    
Predicted Functional Partners:
SDF75234.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.889
SDG19101.1
4-aminobutyrate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
  0.876
SDG24613.1
L-alanine dehydrogenase; Belongs to the AlaDH/PNT family.
    
  0.872
SDF96929.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.775
SDF96976.1
Peptide/nickel transport system permease protein.
      0.757
SDF96998.1
Peptide/nickel transport system permease protein.
      0.715
SDF96902.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.695
SDF96885.1
Hypothetical protein.
     
 0.690
SDF34231.1
Siderophore synthetase component.
  
 
 0.653
SDG58559.1
Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.622
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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