STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF98195.1DNA-binding transcriptional regulator, IclR family. (248 aa)    
Predicted Functional Partners:
SDE86848.1
Urea carboxylase.
  
 
  0.999
SDG08643.1
Acetaldehyde dehydrogenase /alcohol dehydrogenase AdhE; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
    
 0.814
SDE59270.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.715
SDE64970.1
Pyruvate ferredoxin oxidoreductase alpha subunit.
    
  0.691
SDE67388.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.691
SDF34882.1
Pyruvate ferredoxin oxidoreductase alpha subunit.
    
  0.691
SDE98360.1
Transcriptional regulator, GntR family.
 
  
 0.662
SDF98219.1
Alpha/beta hydrolase family protein.
       0.617
SDE96689.1
Glyoxalase family protein.
  
 
 0.593
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.584
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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