STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG17781.1Hypothetical protein. (184 aa)    
Predicted Functional Partners:
SDE82534.1
Hypothetical protein.
  
    0.750
SDE96968.1
Phage tail tape measure protein, TP901 family, core region.
  
    0.743
SDE82168.1
Protein of unknown function.
  
    0.670
SDE96858.1
Protein of unknown function.
  
    0.670
SDG03545.1
Fibronectin type III domain-containing protein.
     
 0.531
SDF62715.1
Glycosyl hydrolase family 20, catalytic domain.
     
 0.523
SDE82121.1
Uncharacterized protein YmfQ in lambdoid prophage, DUF2313 family.
  
    0.445
SDE96816.1
Hypothetical protein.
  
    0.445
SDE82350.1
Phage tail sheath protein.
  
    0.424
SDE97042.1
Phage tail sheath protein.
  
    0.424
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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