STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG39635.1[lysine-biosynthesis-protein LysW]---L-2-aminoadipate ligase; Belongs to the RimK family. (298 aa)    
Predicted Functional Partners:
SDG39535.1
Acetylornithine deacetylase.
 
 
 0.941
SDG39612.1
Hypothetical protein.
  
    0.841
SDG39663.1
Alpha-aminoadipate carrier protein LysW.
  
    0.806
SDG39502.1
Transketolase.
 
    0.792
SDG04230.1
Glutamate synthase (ferredoxin).
    
 0.774
SDG39474.1
Transketolase.
  
    0.759
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
  
  
 0.757
SDG39581.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.757
SDG39446.1
Predicted arabinose efflux permease, MFS family.
       0.754
SDG39427.1
Biotin carboxylase.
     
 0.727
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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