STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG52370.1Glycosyl hydrolases family 18. (418 aa)    
Predicted Functional Partners:
SDE87762.1
Copper amine oxidase N-terminal domain-containing protein.
 
     0.755
SDF92021.1
Copper amine oxidase N-terminal domain-containing protein.
  
     0.752
SDE76170.1
S-layer homology domain-containing protein.
  
     0.740
SDF87231.1
Hypothetical protein.
  
     0.707
SDF87341.1
S-layer homology domain-containing protein.
  
     0.648
SDE64750.1
S-layer homology domain-containing protein.
  
     0.632
SDG10382.1
S-layer homology domain-containing protein.
  
     0.598
SDE58665.1
Fibronectin type III domain-containing protein.
  
     0.583
SDF46055.1
S-layer homology domain-containing protein.
  
     0.562
SDF22242.1
S-layer homology domain-containing protein.
  
    0.550
Your Current Organism:
Fontibacillus panacisegetis
NCBI taxonomy Id: 670482
Other names: CECT 7605, DSM 28129, F. panacisegetis, Fontibacillus panacisegetis Lee et al. 2011, KCTC 13564, Paenibacillus sp. KCTC 13564, strain P11-6
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.