STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUR35117.1Penicillin-binding protein 1A. (821 aa)    
Predicted Functional Partners:
CUR31278.1
FHA domain containing protein.
    
 0.892
CUR31956.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
 
 0.891
CUR32333.1
Penicillin-binding protein.
 
 
 0.862
ftsW
Lipid II flippase FtsW; Belongs to the SEDS family.
  
 
 0.816
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
 
 0.811
rodA
Conserved membrane hypothetical protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
  
 
 0.801
ftsI
Peptidoglycan synthase ftsI homolog.
 
 
0.788
CUR34639.1
Penicillin-binding protein, transpeptidase.
 
 
0.759
CUR30709.1
Endopeptidase, cell wall lytic activity.
     
 0.757
CUR32077.1
Penicillin-binding protein 2.
  
  
 
0.722
Your Current Organism:
Planktothrix tepida
NCBI taxonomy Id: 671072
Other names: Oscillatoria sp. 4d.1, Oscillatoria sp. PCC 9214, P. tepida PCC 9214, Planktothrix sp. PCC 9214, Planktothrix tepida NIES-2870, Planktothrix tepida PCC 9214
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.