STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_0100Two component, sigma54 specific, transcriptional regulator, Fis family. (472 aa)    
Predicted Functional Partners:
DAMO_0099
Putative Sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
   0.865
DAMO_1741
Flagellar motor switch protein FliN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.852
rpoN
RNA polymerase sigma-54 factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
   
 0.757
DAMO_0098
Putative TonB-dependent receptor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.574
DAMO_2794
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 0.483
DAMO_0859
Putative Nitrogen assimilation transcription regulation protein (ntrB) (synonyms:glnR, glnL); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; regulator.
 
   0.472
DAMO_0743
Putative Sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.444
DAMO_0478
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 
 0.439
DAMO_1761
Putative Sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   0.438
DAMO_1720
Putative Histidine kinase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.434
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.