STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_0472Homologs of previously reported genes of unknown function. (451 aa)    
Predicted Functional Partners:
DAMO_0471
Homologs of previously reported genes of unknown function.
     0.960
DAMO_0470
Beta-ribofuranosylaminobenzene 5'-phosphate synthase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.950
folE
GTP cyclohydrolase I; Function of strongly homologous gene; enzyme.
  
  
 0.866
folK
7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.866
DAMO_2673
Putative Delta 1-pyrroline-5-carboxylate synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
   
 0.801
DAMO_2674
Homologs of previously reported genes of unknown function.
 
   
 0.800
fhcA
Formyltransferase/hydrolase complex subunit alpha (fhcA); Function of strongly homologous gene; enzyme.
 
     0.787
DAMO_2658
Putative tetrahydromethanopterin biosynthesis protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.785
fhcD
Formyltransferase/hydrolase complex subunit epsilon (fhcD); Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.783
fhcC
Formyltransferase/hydrolase complex subunit gamma (fhcC); Function of strongly homologous gene; enzyme.
 
     0.781
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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