STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_0487Putative 6-phosphogluconate dehydrogenase (gnd-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (327 aa)    
Predicted Functional Partners:
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
  
 0.995
pgl
6-phosphogluconolactonase (6PGL); Hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate.
 
  
 0.989
rpiA
Ribose 5-phosphate isomerase (Phosphoriboisomerase A) (PRI); Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
    
 0.919
cbbE
Ribulose-phosphate 3-epimerase (Pentose-5-phosphate 3-epimerase) (PPE) (R5P3E); Function of strongly homologous gene; enzyme; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.908
DAMO_0488
Glucose-6-phosphate isomerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the GPI family.
 
   
 0.808
mtnP
5'-methylthioadenosine phosphorylase; Catalyzes the reversible phosphorylation of S-methyl-5'- thioadenosine (MTA) to adenine and 5-methylthioribose-1-phosphate. Involved in the breakdown of MTA, a major by-product of polyamine biosynthesis. Responsible for the first step in the methionine salvage pathway after MTA has been generated from S-adenosylmethionine. Has broad substrate specificity with 6-aminopurine nucleosides as preferred substrates; Belongs to the PNP/MTAP phosphorylase family. MTAP subfamily.
 
      0.777
glk
Glucokinase (Glucose kinase); Belongs to the bacterial glucokinase family.
     
 0.711
DAMO_0489
Protein of unknown function; No homology to any previously reported sequences.
       0.634
DAMO_0490
Protein of unknown function; No homology to any previously reported sequences.
       0.634
DAMO_0483
Homologs of previously reported genes of unknown function.
       0.539
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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