STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_0613Radical SAM domain protein. (329 aa)    
Predicted Functional Partners:
DAMO_0612
Radical SAM domain protein.
 
     0.934
DAMO_0611
Homologs of previously reported genes of unknown function.
 
     0.876
DAMO_0614
Dolichol phosphate mannosyltransferase or dolichol phosphate beta glucosyltrandferase.
 
     0.806
DAMO_0615
Putative Methyltransferase type 11; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.639
DAMO_2413
Putative heme D1 biosynthesis protein (nirJ) involved in nitrite reductase biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.
 
     0.633
DAMO_1224
Protein of unknown function; No homology to any previously reported sequences.
  
     0.557
DAMO_1609
Protein of unknown function; No homology to any previously reported sequences.
  
     0.551
DAMO_0982
Putative pqq coenzyme synthesis protein (pqqE); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.549
DAMO_0294
Protein of unknown function; No homology to any previously reported sequences.
  
     0.507
DAMO_0610
NUDIX hydrolase; Belongs to the Nudix hydrolase family.
       0.502
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.