STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ivd-2isovaleryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (379 aa)    
Predicted Functional Partners:
DAMO_1230
3-hydroxyacyl-CoA dehydrogenase NAD-binding precursor.
  
 0.988
fixA
Protein fixA; Function of strongly homologous gene; carrier.
 
 
 0.987
fixB
Protein FixB; Function of strongly homologous gene; carrier.
 
 0.984
DAMO_2567
Putative enoyl-CoA hydratase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 0.924
DAMO_3066
AMP-dependent synthetase and ligase.
 
 
 0.880
hbdA
3-hydroxybutyryl-CoA dehydrogenase (Beta-hydroxybutyryl-CoA dehydrogenase) (BHBD); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.802
pimB
Acetyl-CoA acetyltransferase with thiolase domain (Acetoacetyl-CoA thiolase); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.636
DAMO_0854
NADP-reducing hydrogenase subunit HndC; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.633
DAMO_0766
FAD-dependent pyridine nucleotide-disulphide oxidoreductase precursor.
  
 0.574
mutB
Fragment of Methylmalonyl-CoA mutase large subunit (MCM-alpha) (part 2); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the thiolase-like superfamily. Thiolase family.
  
 
 0.570
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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