STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fixAProtein fixA; Function of strongly homologous gene; carrier. (266 aa)    
Predicted Functional Partners:
fixB
Protein FixB; Function of strongly homologous gene; carrier.
 0.999
ivd-2
isovaleryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.987
ivd
isovaleryl-CoA dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.966
acdA
Acyl-CoA dehydrogenase.
 
 
 0.964
DAMO_0766
FAD-dependent pyridine nucleotide-disulphide oxidoreductase precursor.
  
 
 0.956
DAMO_1227
Acyl-CoA dehydrogenase.
 
 
 0.947
DAMO_1230
3-hydroxyacyl-CoA dehydrogenase NAD-binding precursor.
  
 
 0.918
sucD
succinyl-CoA synthetase, alpha subunit, NAD(P)-binding; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
   
  
 0.838
DAMO_0035
Putative Dehydrogenases; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.761
DAMO_0700
Putative Electron transfer oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.761
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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