STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_0741Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (115 aa)    
Predicted Functional Partners:
DAMO_0739
Histidine kinase.
 
 
 0.999
DAMO_0744
Response regulator receiver protein.
 
 
 0.994
DAMO_1741
Flagellar motor switch protein FliN; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   0.960
DAMO_1780
Sensor protein (fragment).
 
  
 0.950
DAMO_1747
Putative Flagellar hook protein flgE; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
    0.938
DAMO_1807
Protein of unknown function; No homology to any previously reported sequences.
   
    0.938
flgH
Flagellar L-ring protein (Basal body L-ring protein) (fragment); Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.917
DAMO_1759
Putative Flagellar basal-body rod protein flgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.911
DAMO_0742
Homologs of previously reported genes of unknown function.
  
  
 0.893
DAMO_0743
Putative Sensor protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.881
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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