STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_0882Short-chain dehydrogenase/reductase SDR. (244 aa)    
Predicted Functional Partners:
DAMO_0883
Beta-lactamase-like.
   
 
 0.747
DAMO_0884
Protein of unknown function; No homology to any previously reported sequences.
       0.718
fabD
Malonyl CoA-acyl carrier protein transacylase (MCT); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.698
fabF
3-oxoacyl-[acyl-carrier-protein] synthase II (Beta-ketoacyl-ACP synthase II) (KAS II); Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.537
DAMO_1690
Putative Transcriptional regulator, Crp/Fnr family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
   
 0.535
DAMO_1868
GAF modulated sigma54 specific transcriptional regulator, Fis family (fragment).
  
 
 0.514
DAMO_2454
GAF modulated sigma54 specific transcriptional regulator, Fis family (fragment).
  
 
 0.514
DAMO_0885
Putative DNA-methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.506
cypB
Peptidyl-prolyl cis-trans isomerase B (PPIase B) (Rotamase B) (Cyclophilin ScCypB) (S-cyclophilin); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.500
DAMO_2491
Short-chain dehydrogenase/reductase SDR precursor.
  
     0.495
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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