STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1027Homologs of previously reported genes of unknown function; Belongs to the sulfur carrier protein TusA family. (82 aa)    
Predicted Functional Partners:
DAMO_1025
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.939
DAMO_1024
Putative Molybdopterin biosynthesis protein moeB (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 
 0.846
DAMO_1029
Putative Mov34/MPN/PAD-1 family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.802
DAMO_1026
SirA family protein; Belongs to the sulfur carrier protein TusA family.
 
    
0.744
cysK-2
Pyridoxal-phosphate (PLP) dependent enzymes family; Function of strongly homologous gene; enzyme.
  
  
 0.590
nifS
Cysteine desulfurase (Nitrogenase metalloclusters biosynthesis protein nifS); Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
   
 
 0.580
nifS-2
Cysteine desulfurase (Nitrogenase metalloclusters biosynthesis protein nifS); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
 
 0.580
hisD
Histidinol dehydrogenase (HDH); Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
      
 0.493
cysK
Pyridoxal-phosphate (PLP) dependent enzymes family; Function of strongly homologous gene; enzyme; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
  
 0.453
DAMO_1030
Homologs of previously reported genes of unknown function.
  
    0.427
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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