STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DAMO_1041Exported protein of unknown function; No homology to any previously reported sequences. (182 aa)    
Predicted Functional Partners:
DAMO_1653
Putative Surface antigen (D15) precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.828
DAMO_1188
Putative OstA-like protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.685
DAMO_1042
Exported protein of unknown function; No homology to any previously reported sequences.
       0.678
lpxD
UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
  
    0.627
DAMO_1043
Exported protein of unknown function; No homology to any previously reported sequences.
       0.564
DAMO_0819
Exported protein of unknown function; No homology to any previously reported sequences.
    
 
 0.502
DAMO_2648
Exported protein of unknown function; No homology to any previously reported sequences.
    
 
 0.502
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
       0.498
DAMO_1411
Putative Pili assembly protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.496
pal
OmpA/MotB domain protein precursor; Belongs to the Pal lipoprotein family.
 
 
 0.482
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.