STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lptBPutative lipopolysaccharide transport protein B: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (241 aa)    
Predicted Functional Partners:
DAMO_1187
Homologs of previously reported genes of unknown function.
  
 
 0.990
DAMO_0314
Putative Permease YjgP/YjgQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.987
DAMO_0315
Putative Permease YjgP/YjgQ family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.986
DAMO_1188
Putative OstA-like protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.979
DAMO_3061
Putative Permease YjgP/YjgQ family protein precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.960
DAMO_3060
Putative Inner membrane protein yjgQ; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.957
DAMO_2131
Putative ABC transporter (permease proteine); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
  0.937
modB
Molybdenum ABC transporter (permease protein); Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
      0.881
rpoN
RNA polymerase sigma-54 factor; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
  
 0.827
lpxA
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.765
Your Current Organism:
Methylomirabilis oxyfera
NCBI taxonomy Id: 671143
Other names: C. Methylomirabilis oxyfera, Candidatus Methylomirabilis oxyfera
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